Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_79

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_78: 8446 - HMMPfam-NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)-PF07225, at 185623 to 186207 8446 mRNA_79: 8447 - K04906 KCNH3 potassium voltage-gated channel Eag-related subfamily H member 3, at 186706 to 188932 8447 mRNA_80: 8448 - K04911 KCNH8 potassium voltage-gated channel Eag-related subfamily H member 8, at 189215 to 191649 8448

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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186,205 - 0.5
186,211 - 0.1
186,215 + 1.3
186,216 - -2.1
186,217 + -0.4
186,248 - 1.6
186,249 - -0.2
186,259 - 0.1
186,289 - -0.2
186,291 + 2.3
186,311 + -0.7
186,338 - 1.9
186,351 + 0.4
186,354 + 0.0
186,354 + 0.3
186,354 + 2.2
186,359 - 0.5
186,385 - 0.3
186,386 - -0.6
186,388 - 0.3
186,392 + 0.6
186,412 + -0.2
186,416 - 0.9
186,422 - 0.7
186,427 + -0.4
186,483 + 0.0
186,511 - -0.5
186,518 + 0.7
186,522 + -0.1
186,526 - -0.6
186,529 - 1.0
186,571 - 1.1
186,574 + -0.0
186,616 - -0.2
186,625 - 0.7
186,638 - 1.3
186,802 - -0.2
186,806 - -0.1
186,927 - -0.2
187,205 - 8447 mRNA_79 0.22 0.7
187,392 - 8447 mRNA_79 0.31 1.1
188,059 + 8447 mRNA_79 0.61 2.5
188,292 - 8447 mRNA_79 0.71 1.0
188,304 - 8447 mRNA_79 0.72 -0.8
188,379 - 8447 mRNA_79 0.75 1.3
188,544 + 8447 mRNA_79 0.83 -1.0
188,707 + 8447 mRNA_79 0.90 0.0
188,895 - -0.0
188,904 + -0.6
188,982 + -0.2
189,583 - 8448 mRNA_80 0.15 0.1