Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_69

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437 mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166029 to 167085 8438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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163,919 + -0.2
163,920 + 1.6
164,051 - 0.5
164,314 + 8437 mRNA_69 0.19 1.1
164,349 - 8437 mRNA_69 0.21 0.5
164,908 + 8437 mRNA_69 0.51 1.0
165,182 - 8437 mRNA_69 0.66 0.9
165,201 + 8437 mRNA_69 0.67 -0.6
165,467 + 8437 mRNA_69 0.81 0.6
165,660 - 0.6
165,771 + -1.0
165,799 + 0.2
165,801 - -0.4
165,832 + 2.7
165,875 - -0.6
165,879 - 0.6
165,882 + 1.2
165,888 - 0.1
165,897 - 0.6
165,899 - 0.7
165,912 - 1.3
165,912 + -0.7
165,926 - 0.2
165,940 + 0.9
165,940 + -2.5
165,942 - 0.7
165,951 - -1.4
165,952 - -0.3
165,952 + -0.2
165,953 + 0.5
165,966 - 1.0
165,967 + 1.7
166,098 + -0.3
166,099 - 1.3
166,103 + -1.0
166,113 - -0.2
166,117 + 0.5
166,117 + -1.3
166,126 + 2.1
166,255 + 8438 mRNA_70 0.21 2.0
166,263 - 8438 mRNA_70 0.22 0.1
166,400 + 8438 mRNA_70 0.35 -0.9
166,406 - 8438 mRNA_70 0.36 -0.7