Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_39

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406 mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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93,961 + 8406 mRNA_38 0.50 0.0
93,965 - 8406 mRNA_38 0.50 1.6
94,027 + 8406 mRNA_38 0.57 -1.5
94,084 - 8406 mRNA_38 0.63 0.7
94,169 - 8406 mRNA_38 0.72 0.5
94,285 + 8406 mRNA_38 0.84 0.2
94,288 - 8406 mRNA_38 0.84 0.2
94,288 - 8406 mRNA_38 0.84 0.6
94,445 + 0.2
94,491 + 0.9
94,515 - 0.9
94,534 - -0.4
94,631 - -0.3
94,635 - 0.3
94,683 - -0.1
94,686 - 1.1
94,687 + -0.2
94,687 + 2.0
94,800 + 0.2
94,800 + -0.5
94,803 - 0.8
94,803 - 0.7
94,803 - 0.3
94,890 + -0.0
94,917 + -0.1
94,917 - -0.5
94,943 + 0.1
94,975 + 8407 mRNA_39 0.12 0.1
94,980 + 8407 mRNA_39 0.13 0.1
94,993 + 8407 mRNA_39 0.14 -0.3
95,108 + 8407 mRNA_39 0.27 0.1
95,126 - 8407 mRNA_39 0.29 0.5
95,176 - 8407 mRNA_39 0.35 1.8
95,240 - 8407 mRNA_39 0.42 -0.4
95,274 - 8407 mRNA_39 0.46 1.8
95,475 - 8407 mRNA_39 0.68 0.8
95,528 - 8407 mRNA_39 0.74 0.6
95,566 - 8407 mRNA_39 0.78 0.8
95,645 - 8407 mRNA_39 0.87 0.6
95,648 + 8407 mRNA_39 0.87 -0.9
95,650 - 8407 mRNA_39 0.88 -0.4
95,707 + 1.7
95,713 - -0.1
95,750 + 0.4
95,770 + 0.1
95,809 - -0.1
95,818 - -1.5
95,823 + 0.1
96,060 + 0.4
96,091 - 0.6
96,091 + -1.5
96,109 + 0.8
96,270 - 8408 mRNA_40 0.13 -0.3
96,357 - 8408 mRNA_40 0.21 -0.6
96,366 + 8408 mRNA_40 0.22 1.4
96,378 + 8408 mRNA_40 0.23 -1.2
96,410 - 8408 mRNA_40 0.26 -0.9
96,462 + 8408 mRNA_40 0.30 0.5
96,560 + 8408 mRNA_40 0.39 0.1
96,621 - 8408 mRNA_40 0.45 1.0
96,674 - 8408 mRNA_40 0.50 0.8
96,754 - 8408 mRNA_40 0.57 0.7