Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_19

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50473 to 51921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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51,432 - 8386 mRNA_18 0.66 0.1
51,550 + 8386 mRNA_18 0.74 0.3
51,561 - 8386 mRNA_18 0.75 0.2
51,562 + 8386 mRNA_18 0.75 0.2
51,654 + 8386 mRNA_18 0.82 -1.1
51,655 - 8386 mRNA_18 0.82 1.7
51,845 - 0.8
51,845 + -0.2
51,846 + -1.2
51,962 - -0.1
52,120 + -0.3
52,128 - 0.2
52,132 - 0.0
52,157 + 0.1
52,815 + 8387 mRNA_19 0.22 -1.5
52,819 - 8387 mRNA_19 0.22 1.0
52,852 - 8387 mRNA_19 0.23 -0.0
52,876 - 8387 mRNA_19 0.24 -0.0
52,889 - 8387 mRNA_19 0.25 -0.2
52,897 + 8387 mRNA_19 0.25 0.8
52,952 - 8387 mRNA_19 0.28 1.0
52,970 + 8387 mRNA_19 0.28 2.3
53,847 + 8387 mRNA_19 0.66 0.2
53,892 - 8387 mRNA_19 0.68 -1.1
53,900 + 8387 mRNA_19 0.68 0.8
53,910 + 8387 mRNA_19 0.68 -0.7
53,912 - 8387 mRNA_19 0.68 0.5
54,110 + 8387 mRNA_19 0.77 0.4
54,165 - 8387 mRNA_19 0.79 0.6
54,210 + 8387 mRNA_19 0.81 0.3
54,466 + -1.2
54,566 + -0.0
54,569 - -1.0
54,595 - 0.7
54,602 - 0.5
54,605 + 1.8
54,629 + -0.8
54,751 - -0.0
54,754 - -0.4
54,754 - 0.6
54,758 - -0.5
54,760 + 0.9
54,761 + -1.1
54,765 - 0.3
54,767 + -0.3
54,768 - 1.4
54,776 - 0.5
54,777 + 1.5
54,777 + -2.2
54,782 + -0.2
54,787 + -0.5
54,913 - 1.4
54,917 - -0.5
54,947 + -0.3
54,947 + 0.8
54,952 - -1.3
55,100 + -1.1
55,379 - 0.3
55,383 + -0.4