Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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595 + 0.1
609 - 0.6
637 - -0.6
651 + 0.6
654 + 0.4
659 - 0.5
663 + -0.5
672 - 0.0
673 + 0.3
685 + 1.8
725 + -1.2
790 - -0.1
791 + 1.1
798 + 0.6
798 + 1.2
804 - 0.8
821 + -1.2
860 + -0.4
899 - 0.9
916 + 1.0
939 + 0.1
957 + -1.0
975 - 0.9
976 + 2.5
996 - 0.5
1,005 + 0.0
1,005 - 0.6
1,007 - 0.4
1,052 + 1.1
1,058 + 2.4
1,070 + 0.2
1,113 - 1.1
1,115 - 0.1
1,117 + -0.2
1,207 + 0.3
1,257 + 0.4
1,285 - 0.4
1,359 - -0.1
1,422 + 0.3
1,960 + 8369 mRNA_1 0.44 -0.2
2,268 + 8369 mRNA_1 0.79 -0.1
2,361 - 8369 mRNA_1 0.89 0.8
2,441 + -0.3
2,550 + 0.7
2,552 - 0.6
2,564 + -1.0
2,701 + 1.9
2,839 - 1.7
2,853 + 1.2
2,946 - -1.1
3,005 - 0.3
3,125 - 0.5
3,136 + 0.6