Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8439

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8438: 16806 - K07910 RAB18 Ras-related protein Rab-18, at 1229197 to 1230748 16806 mRNA_8439: 16807 - KOG4162 Predicted calmodulin-binding protein, at 1231325 to 1234854 16807 mRNA_8440: 16808 - Hypothetical Protein, at 1234989 to 1235656 16808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,230,616 - 0.3
1,230,638 - -0.4
1,230,922 + -0.7
1,231,058 - -0.0
1,231,060 - 1.2
1,231,217 - 1.6
1,231,224 + 1.1
1,231,228 - 0.8
1,231,255 + -0.5
1,231,518 - 1.4
1,231,530 - -0.7
1,231,543 + -1.8
1,231,668 + 0.0
1,231,979 + 16807 mRNA_8439 0.19 -0.4
1,232,107 - 16807 mRNA_8439 0.22 0.5
1,232,121 + 16807 mRNA_8439 0.23 -0.8
1,232,236 - 16807 mRNA_8439 0.26 2.5
1,232,268 + 16807 mRNA_8439 0.27 -0.2
1,232,270 - 16807 mRNA_8439 0.27 0.1
1,232,396 - 16807 mRNA_8439 0.30 0.0
1,233,202 - 16807 mRNA_8439 0.53 -1.0
1,233,642 - 16807 mRNA_8439 0.66 0.3
1,234,932 - 0.0
1,234,951 + -0.4
1,234,957 - 0.6
1,235,566 + 16808 mRNA_8440 0.86 -0.9
1,235,671 - 0.0
1,235,696 + 2.4