Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8374

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8373: 16741 - KOG0504 FOG Ankyrin repeat, at 1060392 to 1061446 16741 mRNA_8374: 16742 - KOG0053 Cystathionine beta-lyases/cystathionine gamma-synthases, at 1061726 to 1063499 16742 mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1064293 to 1065552 16743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,061,134 - 16741 mRNA_8373 0.70 0.3
1,061,229 - 16741 mRNA_8373 0.79 1.2
1,061,230 + 16741 mRNA_8373 0.79 1.1
1,061,233 - 16741 mRNA_8373 0.80 0.0
1,061,233 - 16741 mRNA_8373 0.80 3.2
1,061,376 + 1.1
1,061,397 + -1.1
1,061,688 - -0.3
1,061,706 - 1.3
1,062,286 - 16742 mRNA_8374 0.32 -0.8
1,062,297 + 16742 mRNA_8374 0.32 0.0
1,062,575 - 16742 mRNA_8374 0.48 -0.4
1,062,578 - 16742 mRNA_8374 0.48 1.9
1,062,581 - 16742 mRNA_8374 0.48 -1.7
1,063,259 - 16742 mRNA_8374 0.86 0.7
1,063,578 - -0.9
1,063,840 + 2.5
1,063,860 - 2.0
1,063,875 + 0.9
1,063,877 - 2.6
1,064,313 + 1.0
1,064,321 - -0.0