Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8355

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8354: 16722 - K07734 paiB transcriptional regulator, at 1015400 to 1016161 16722 mRNA_8355: 16723 - KOG2111 Uncharacterized conserved protein, contains WD40 repeats, at 1016689 to 1018583 16723 mRNA_8356: 16724 - K13985 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D, at 1018843 to 1020921 16724

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,015,755 + 16722 mRNA_8354 0.47 0.8
1,015,919 + 16722 mRNA_8354 0.68 0.8
1,016,043 + 16722 mRNA_8354 0.84 1.3
1,016,060 + 16722 mRNA_8354 0.87 0.3
1,016,176 - 3.1
1,016,195 - -1.3
1,016,283 - 0.1
1,016,357 - 0.1
1,016,416 - 0.3
1,016,467 - -1.1
1,016,538 + 1.1
1,016,592 - 1.7
1,016,600 + -0.6
1,016,639 - -0.7
1,016,754 - -2.3
1,017,105 + 16723 mRNA_8355 0.22 -0.3
1,017,109 + 16723 mRNA_8355 0.22 -1.3
1,017,394 + 16723 mRNA_8355 0.37 -1.9
1,017,403 + 16723 mRNA_8355 0.38 -1.8
1,018,241 - 16723 mRNA_8355 0.82 -1.7
1,018,242 + 16723 mRNA_8355 0.82 -3.6
1,018,266 + 16723 mRNA_8355 0.83 -0.9
1,018,539 - 0.0
1,018,701 - -0.3
1,018,707 - 1.0
1,018,714 + 0.5
1,018,971 - -0.5
1,019,012 + 0.7
1,019,107 - 16724 mRNA_8356 0.13 1.5
1,019,129 - 16724 mRNA_8356 0.14 0.1
1,019,161 - 16724 mRNA_8356 0.15 0.8
1,019,161 - 16724 mRNA_8356 0.15 1.6
1,019,190 + 16724 mRNA_8356 0.17 0.1
1,019,228 + 16724 mRNA_8356 0.19 -0.9