Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8346

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8345: 16713 - K00062 E1.1.1.116 D-arabinose 1-dehydrogenase, at 989216 to 990816 16713 mRNA_8346: 16714 - Hypothetical Protein, at 991012 to 994561 16714 mRNA_8347: 16715 - Hypothetical Protein, at 994910 to 995448 16715 mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995447 to 998474 16716

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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990,429 + 16713 mRNA_8345 0.76 1.3
990,552 - 16713 mRNA_8345 0.83 0.4
990,992 - -0.5
991,003 + -1.4
991,039 + 1.3
991,323 + 0.4
991,420 + 16714 mRNA_8346 0.11 -1.5
991,448 - 16714 mRNA_8346 0.12 0.6
991,752 - 16714 mRNA_8346 0.21 -0.1
991,917 - 16714 mRNA_8346 0.25 -0.4
992,188 + 16714 mRNA_8346 0.33 -0.5
993,204 + 16714 mRNA_8346 0.62 0.8
993,205 - 16714 mRNA_8346 0.62 -0.5
993,374 - 16714 mRNA_8346 0.67 0.6
993,386 - 16714 mRNA_8346 0.67 -0.1
993,624 - 16714 mRNA_8346 0.74 -0.4
993,637 - 16714 mRNA_8346 0.74 0.7
993,942 - 16714 mRNA_8346 0.83 -1.0
994,065 - 16714 mRNA_8346 0.86 -0.8
994,208 - -0.9
994,246 + 2.1
994,250 + -0.2
994,626 - 0.7
994,652 - 0.9
994,653 - 0.2
994,661 - 0.5
994,662 + 0.1
994,677 + -1.1
994,684 + 0.3
994,808 + 3.0
994,811 - 1.0
994,818 - -0.6
994,823 - -0.2
994,840 - 0.8
994,925 - -0.1
994,929 - 0.6
994,930 - 0.3
994,933 - 0.6
994,936 - -0.3
994,939 + 0.2
994,940 + 1.8
994,948 + 0.1
994,948 - 0.7
994,949 + 1.1
994,961 + -1.3
994,967 + 16715 mRNA_8347 0.11 0.1
994,972 - 16715 mRNA_8347 0.12 0.9
994,973 - 16715 mRNA_8347 0.12 -0.3
994,975 - 16715 mRNA_8347 0.12 0.4
994,978 + 16715 mRNA_8347 0.13 1.5
995,029 - 16715 mRNA_8347 0.22 -0.3
995,048 + 16715 mRNA_8347 0.26 1.7
995,071 - 16715 mRNA_8347 0.30 0.2
995,073 - 16715 mRNA_8347 0.30 1.4
995,089 + 16715 mRNA_8347 0.33 0.4
995,090 + 16715 mRNA_8347 0.33 -0.1
995,102 + 16715 mRNA_8347 0.36 -1.1
995,121 + 16715 mRNA_8347 0.39 -0.5
995,136 + 16715 mRNA_8347 0.42 1.3
995,140 - 16715 mRNA_8347 0.43 0.4
995,146 - 16715 mRNA_8347 0.44 1.3
995,147 + 16715 mRNA_8347 0.44 -0.1
995,154 - 16715 mRNA_8347 0.45 -0.9
995,155 + 16715 mRNA_8347 0.45 0.1
995,161 - 16715 mRNA_8347 0.47 1.0
995,168 - 16715 mRNA_8347 0.48 0.6
995,176 + 16715 mRNA_8347 0.49 -0.3
995,179 - 16715 mRNA_8347 0.50 -0.4
995,194 - 16715 mRNA_8347 0.53 0.6
995,196 + 16715 mRNA_8347 0.53 0.4
995,207 - 16715 mRNA_8347 0.55 0.9
995,208 + 16715 mRNA_8347 0.55 0.3
995,215 + 16715 mRNA_8347 0.57 -0.4
995,221 + 16715 mRNA_8347 0.58 -0.1
995,222 + 16715 mRNA_8347 0.58 -1.3
995,238 - 16715 mRNA_8347 0.61 0.7
995,267 + 16715 mRNA_8347 0.66 0.1
995,283 - 16715 mRNA_8347 0.69 0.5
995,293 + 16715 mRNA_8347 0.71 -0.6
995,301 - 16715 mRNA_8347 0.73 -0.3
995,307 - 16715 mRNA_8347 0.74 1.7
995,308 - 16715 mRNA_8347 0.74 -0.2
995,310 - 16715 mRNA_8347 0.74 0.2
995,314 - 16715 mRNA_8347 0.75 1.6
995,316 - 16715 mRNA_8347 0.75 1.1
995,329 - 16715 mRNA_8347 0.78 0.9
995,339 - 16715 mRNA_8347 0.80 -0.3
995,350 - 16715 mRNA_8347 0.82 -1.4
995,352 + 16715 mRNA_8347 0.82 -0.2
995,353 - 16715 mRNA_8347 0.82 -0.3
995,354 + 16715 mRNA_8347 0.82 1.0
995,370 - 16715 mRNA_8347 0.85 -1.3
995,373 + 16715 mRNA_8347 0.86 -1.0
995,373 - 16715 mRNA_8347 0.86 0.7
995,376 + 16715 mRNA_8347 0.86 -0.0
995,376 + 16715 mRNA_8347 0.86 -0.3
995,444 - 0.4
995,465 - -1.5
995,487 - 0.7
995,548 + 0.3
995,560 - 0.2