Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8319

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925338 to 930210 16686 mRNA_8319: 16687 - HMMPfam-Protein of unknown function (DUF2370)-PF10176, at 930724 to 932736 16687 mRNA_8320: 16688 - KOG1516 Carboxylesterase and related proteins, at 932873 to 935850 16688

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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929,990 - -0.4
930,139 - -0.8
930,151 + -1.0
930,426 - -0.1
930,426 - 1.7
930,437 + 0.1
930,450 - 1.8
930,459 + 0.5
930,463 - -0.7
930,750 - -0.1
931,339 - 16687 mRNA_8319 0.31 0.8
931,553 + 16687 mRNA_8319 0.41 1.3
931,888 - 16687 mRNA_8319 0.58 0.0
932,068 - 16687 mRNA_8319 0.67 -0.2
932,167 + 16687 mRNA_8319 0.72 1.4
932,170 + 16687 mRNA_8319 0.72 0.4
932,183 + 16687 mRNA_8319 0.72 0.8
932,190 + 16687 mRNA_8319 0.73 -0.1
932,194 - 16687 mRNA_8319 0.73 -2.4
932,334 - 16687 mRNA_8319 0.80 0.6
932,369 - 16687 mRNA_8319 0.82 -0.3
932,493 + 16687 mRNA_8319 0.88 -0.5
932,500 + 16687 mRNA_8319 0.88 0.3
932,785 - -0.4
932,941 + 1.5
933,067 + -0.1
933,082 + 0.9
933,249 + 16688 mRNA_8320 0.13 1.0
933,528 + 16688 mRNA_8320 0.22 1.2
933,666 + 16688 mRNA_8320 0.27 0.9
933,669 - 16688 mRNA_8320 0.27 1.3