Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8292

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863269 to 864250 16659 mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660 mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865837 to 868084 16661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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863,854 + 16659 mRNA_8291 0.60 3.1
864,104 - 16659 mRNA_8291 0.85 -0.9
864,117 + 16659 mRNA_8291 0.86 1.0
864,232 + 0.3
864,236 + -2.5
864,377 - 0.3
864,398 - 0.8
864,410 - -0.6
864,413 + 1.9
864,535 + 1.0
864,555 + 0.2
864,612 + 0.4
864,660 - 0.6
864,715 - -0.3
864,831 + 16660 mRNA_8292 0.13 1.4
864,864 + 16660 mRNA_8292 0.17 -0.2
864,867 - 16660 mRNA_8292 0.17 -0.6
864,870 - 16660 mRNA_8292 0.17 0.5
864,876 - 16660 mRNA_8292 0.18 -1.9
864,898 + 16660 mRNA_8292 0.21 -1.1
864,981 + 16660 mRNA_8292 0.31 0.5
865,030 + 16660 mRNA_8292 0.36 0.2
865,094 + 16660 mRNA_8292 0.44 -0.6
865,297 + 16660 mRNA_8292 0.68 -0.7
865,338 + 16660 mRNA_8292 0.73 -0.1
865,417 + 16660 mRNA_8292 0.83 2.2
865,727 - -0.5
865,881 + -0.0
865,904 + 0.6
866,010 - 1.5
866,010 - -0.8