Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8238

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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735,983 - 16605 mRNA_8237 0.86 1.9
736,010 - 16605 mRNA_8237 0.87 1.2
736,011 + 16605 mRNA_8237 0.88 2.3
736,019 + 16605 mRNA_8237 0.88 1.6
736,025 + 16605 mRNA_8237 0.88 -0.0
736,137 - 1.0
736,148 + 0.3
736,169 + 0.1
736,172 - 1.2
736,224 - -0.1
736,309 - 1.3
736,315 + 2.6
736,324 - 0.1
736,329 + -1.0
736,329 - 2.2
736,334 - 1.6
736,350 - -1.9
736,351 + 0.4
736,457 + -0.2
736,479 - 1.5
736,487 - 1.7
736,488 - 0.9
736,488 + -0.5
736,490 - -1.1
736,498 + 1.6
736,500 - 0.4
736,501 - -2.1
736,501 + 1.0
736,502 + 0.3
736,502 + 0.1
736,502 + -0.8
736,503 + -0.3
736,504 - 0.3
736,505 + 1.8
736,505 - 0.3
736,506 - 0.9
736,508 + 0.8
736,510 + -0.0
736,511 - 0.2
736,511 - -0.3
736,544 - 0.2
736,545 + -0.2
736,546 - -0.3
736,566 + 0.7
736,581 + 0.3
736,663 - -0.1
736,675 + -0.0
736,686 + 0.7
736,714 - -0.4
736,714 + 0.7
736,725 - -0.1
736,731 - 0.7
736,745 + -0.2
736,857 - -0.4
736,863 + 0.5
736,866 - 1.8
736,881 + -0.4
737,003 - 16606 mRNA_8238 0.12 1.9
737,004 - 16606 mRNA_8238 0.12 -0.5
737,005 + 16606 mRNA_8238 0.13 1.2
737,012 - 16606 mRNA_8238 0.13 0.2
737,036 - 16606 mRNA_8238 0.15 1.0
737,317 + 16606 mRNA_8238 0.42 0.2
737,472 + 16606 mRNA_8238 0.57 1.2
737,573 - 16606 mRNA_8238 0.67 0.3
737,618 + 16606 mRNA_8238 0.71 0.3
737,725 - 16606 mRNA_8238 0.81 -0.7
737,832 - -0.0
737,838 + 0.3
737,849 - 2.2
737,854 + -0.1
737,857 - -0.9
737,868 + 0.3
737,900 + -0.1
737,902 - -0.4
737,957 + -1.1
737,975 - -0.7
737,976 - 0.2
737,979 + 0.0
737,987 + 0.7
737,989 - -0.3
737,994 - 1.4
738,011 + 0.0
738,016 + 0.3
738,027 - -0.4
738,045 + -0.4
738,048 - -1.1
738,050 - 1.1
738,054 + -0.6
738,072 - -0.5
738,135 + -1.4
738,174 - -0.3
738,179 + -1.1
738,204 - -0.2
738,207 + -0.6
738,215 + -0.3
738,337 + 0.5
738,473 + 16607 mRNA_8239 0.11 0.3
738,488 + 16607 mRNA_8239 0.11 1.3
738,618 - 16607 mRNA_8239 0.17 1.6