Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8190

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629881 to 631255 16557 mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631383 to 634543 16558 mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634694 to 637536 16559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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630,454 - 16557 mRNA_8189 0.42 -0.5
630,461 + 16557 mRNA_8189 0.42 -0.2
630,464 + 16557 mRNA_8189 0.42 0.7
630,605 - 16557 mRNA_8189 0.53 0.2
630,864 - 16557 mRNA_8189 0.71 -0.4
630,892 + 16557 mRNA_8189 0.74 -0.6
631,003 - 16557 mRNA_8189 0.82 0.7
631,168 - 0.4
631,193 + -0.1
631,193 + 0.3
631,194 + 0.1
631,319 - 0.5
631,319 - -0.5
631,331 - 1.2
631,337 + -0.3
631,358 - -0.7
631,632 - 0.7
632,238 + 16558 mRNA_8190 0.27 -0.3
632,339 - 16558 mRNA_8190 0.30 0.7
632,681 - 16558 mRNA_8190 0.41 2.0
632,684 + 16558 mRNA_8190 0.41 0.1
632,685 + 16558 mRNA_8190 0.41 -0.5
632,689 - 16558 mRNA_8190 0.41 -0.5
632,699 + 16558 mRNA_8190 0.42 -0.7
632,719 - 16558 mRNA_8190 0.42 -1.1
632,760 + 16558 mRNA_8190 0.44 -1.2
632,830 - 16558 mRNA_8190 0.46 0.9
632,892 - 16558 mRNA_8190 0.48 -1.0
633,284 + 16558 mRNA_8190 0.60 -0.4
633,580 - 16558 mRNA_8190 0.70 -0.8
633,614 + 16558 mRNA_8190 0.71 -0.1
634,037 - 16558 mRNA_8190 0.84 0.3
634,375 - 0.6
634,622 - -0.2
634,625 + 0.4
634,631 + -2.2
634,636 + -0.8
634,659 - 0.0
634,671 + 0.7
634,679 + 1.8
634,755 + -0.1
634,795 + 0.4
634,800 + 0.4
634,962 + 0.9
635,069 - 16559 mRNA_8191 0.13 -0.5
635,086 - 16559 mRNA_8191 0.14 0.0
635,245 - 16559 mRNA_8191 0.19 -0.1
635,382 + 16559 mRNA_8191 0.24 0.6