Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8189

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625723 to 629622 16556 mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629881 to 631255 16557 mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631383 to 634543 16558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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629,300 + 0.8
629,320 + 0.3
629,858 + -0.1
630,012 + 0.9
630,023 - 16557 mRNA_8189 0.10 -0.9
630,334 - 16557 mRNA_8189 0.33 1.3
630,454 - 16557 mRNA_8189 0.42 -0.5
630,461 + 16557 mRNA_8189 0.42 -0.2
630,464 + 16557 mRNA_8189 0.42 0.7
630,605 - 16557 mRNA_8189 0.53 0.2
630,864 - 16557 mRNA_8189 0.71 -0.4
630,892 + 16557 mRNA_8189 0.74 -0.6
631,003 - 16557 mRNA_8189 0.82 0.7
631,168 - 0.4
631,193 + -0.1
631,193 + 0.3
631,194 + 0.1
631,319 - 0.5
631,319 - -0.5
631,331 - 1.2
631,337 + -0.3
631,358 - -0.7
631,632 - 0.7
632,238 + 16558 mRNA_8190 0.27 -0.3