Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8186

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618810 to 622514 16553 mRNA_8186: 16554 - Hypothetical Protein, at 622930 to 623583 16554 mRNA_8187: 16555 - K10949 KDELR ER lumen protein retaining receptor, at 624425 to 625437 16555

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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623,062 + 16554 mRNA_8186 0.20 1.8
623,357 - 16554 mRNA_8186 0.65 -0.4
623,378 + 16554 mRNA_8186 0.69 1.4
623,487 + 16554 mRNA_8186 0.85 -0.2
623,488 - 16554 mRNA_8186 0.85 0.0
623,496 - 16554 mRNA_8186 0.87 0.4
623,498 - 16554 mRNA_8186 0.87 2.0
623,498 - 16554 mRNA_8186 0.87 1.1
623,498 - 16554 mRNA_8186 0.87 0.9
623,503 - 16554 mRNA_8186 0.88 1.5
623,528 - -0.7
623,530 + 0.2
623,540 - -0.7
623,657 + 1.3
623,669 + 0.6
623,673 - -0.6
623,675 + -1.1
623,682 + -0.4
623,682 - -1.1
623,687 + 0.1
623,689 + -0.1
623,717 + 1.1
623,807 - 0.4
623,851 - -0.7
623,853 - 0.6
623,853 - 1.0
623,857 - 0.6
623,858 + 0.4
623,858 + 0.3
623,862 + 0.4
623,867 + 1.7
623,881 + -0.2
623,954 + 0.6
623,962 - 0.2
623,975 + -1.7
623,990 + 0.5
623,992 + 1.3
623,992 - 1.4
623,998 - -0.2
624,000 - 0.3
624,004 + -0.4
624,013 + 1.0
624,016 - 0.1
624,019 + 2.7
624,025 - 1.0
624,029 - 0.8
624,160 - 0.2
624,164 + -1.1
624,165 - -1.5
624,165 - 1.3
624,170 - 0.8
624,325 + -1.3
624,327 - 1.0
624,457 + -0.7
624,463 - 0.3