Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8171

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585766 to 587530 16538 mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587656 to 589364 16539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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586,873 + 16538 mRNA_8170 0.63 0.3
587,056 - 16538 mRNA_8170 0.73 0.1
587,181 + 16538 mRNA_8170 0.80 0.3
587,344 + 16538 mRNA_8170 0.89 0.1
587,478 - 0.1
587,604 + 1.0
587,618 - 0.8
587,626 + 0.5
588,177 - 16539 mRNA_8171 0.30 -0.3
588,347 + 16539 mRNA_8171 0.40 2.2
588,781 - 16539 mRNA_8171 0.66 -0.6
589,409 + 0.4
589,652 + -2.0
589,692 + -1.2
589,835 + 0.2
589,987 - -2.0
590,106 - 0.4
590,112 - 0.5
590,123 + 0.1
590,256 + 1.1
590,258 - -1.1
590,268 + -0.2
590,270 + 0.2
590,294 - -0.1