Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8132

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491877 to 495566 16499 mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495876 to 497390 16500 mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497849 to 499471 16501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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495,187 + 16499 mRNA_8131 0.90 0.3
495,211 - 1.0
495,215 - -0.2
495,341 - 0.6
495,348 - 0.0
495,349 + 0.4
495,356 - 1.3
495,618 + -0.0
495,621 - 1.4
495,622 + 0.1
495,624 - -0.5
495,624 - -0.3
495,625 + 0.9
495,638 + 2.0
495,651 + 1.7
495,800 - 1.0
495,801 + -0.1
495,806 - -0.3
495,818 + 0.4
495,957 - 0.1
496,097 - 16500 mRNA_8132 0.15 -0.5
496,104 + 16500 mRNA_8132 0.15 -0.2
496,105 - 16500 mRNA_8132 0.15 0.4
496,106 + 16500 mRNA_8132 0.15 -0.0
496,391 + 16500 mRNA_8132 0.34 -0.2
496,401 + 16500 mRNA_8132 0.35 -0.1
496,525 - 16500 mRNA_8132 0.43 0.2
496,986 + 16500 mRNA_8132 0.73 -0.0
497,224 - 16500 mRNA_8132 0.89 0.6
497,333 - -1.1
497,419 + 1.8
497,422 - 1.2
497,431 - -0.6
497,435 + 0.3
497,436 - -0.1
497,446 + 2.7
497,446 - -0.1
497,453 - 0.6
497,579 + 0.7
497,590 + -1.2
497,626 - 0.1
497,705 + 1.0
497,897 - 1.2
497,918 + 1.1
497,932 + -0.5
498,046 + 16501 mRNA_8133 0.12 2.3
498,348 + 16501 mRNA_8133 0.31 0.3