Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8070

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357161 to 359241 16439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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351,975 + -1.3
352,103 - -1.3
352,112 + -0.6
352,381 - 2.1
352,381 - 0.7
352,413 - 1.0
352,415 - 0.0
352,422 - -0.1
352,547 - 0.8
352,692 - -0.0
352,692 - 1.3
352,693 - -0.1
352,700 + 0.0
352,709 - 0.1
352,714 + -0.7
352,855 - 1.2
352,884 - -0.5
352,999 - 0.7
353,272 - 1.9
353,425 - 16438 mRNA_8070 0.13 -0.8
353,440 + 16438 mRNA_8070 0.14 1.1
353,507 - 16438 mRNA_8070 0.16 0.0
353,521 + 16438 mRNA_8070 0.16 0.5
354,060 + 16438 mRNA_8070 0.32 -0.6
354,141 + 16438 mRNA_8070 0.34 0.3
354,298 + 16438 mRNA_8070 0.39 0.2
354,417 + 16438 mRNA_8070 0.42 -1.2
354,542 - 16438 mRNA_8070 0.46 0.5
355,010 + 16438 mRNA_8070 0.60 1.3
355,170 + 16438 mRNA_8070 0.65 0.5
355,201 - 16438 mRNA_8070 0.65 1.3
355,461 - 16438 mRNA_8070 0.73 2.0
355,720 - 16438 mRNA_8070 0.81 0.1
355,736 + 16438 mRNA_8070 0.81 1.9
355,993 - 16438 mRNA_8070 0.89 0.0
356,002 + 16438 mRNA_8070 0.89 0.7
356,006 + 16438 mRNA_8070 0.89 0.9
356,185 - -1.1
356,224 + -0.3
356,228 + 1.7
356,331 - 1.9
356,336 + 0.0
356,344 + 2.1
356,361 + 0.6
356,372 - 1.7
356,373 - 0.5
356,374 - 1.5
356,389 + 1.7
356,390 + 1.4
356,411 - 0.2
356,431 - -1.0
356,460 + 0.7
356,492 + -0.4
356,492 + 0.4
356,499 + 2.4
356,506 + -0.1
356,533 + 1.5
356,534 - 0.7
356,597 - 1.7
356,608 + 0.3
356,611 - -0.1
356,613 - 1.1
356,614 + 0.2
356,614 + 0.9
356,614 - 0.3
356,618 + -0.4
356,620 + 1.3
356,626 + 0.6
356,626 + -0.0
356,628 - 0.4
356,630 - -0.3
356,633 - 0.1
356,636 + -0.3
356,639 - 1.3
356,658 - 1.8
356,764 - 0.5
356,852 - 0.5
356,866 - -0.4
356,886 - -0.2
356,909 + 0.0
356,916 + 0.3
356,918 - 0.8
356,934 + 0.2
356,934 - 0.1
356,935 + 0.5
356,936 - 0.5
356,949 - -0.1
356,950 - -0.1
356,967 - 1.0
356,997 + -0.1
357,026 + 1.2
357,077 + 0.9
357,128 - 0.6
357,223 + 1.5