Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8063

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329647 to 331079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431 mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333407 to 335918 16432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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330,607 - 16430 mRNA_8062 0.67 0.1
330,723 - 16430 mRNA_8062 0.75 0.4
330,750 - 16430 mRNA_8062 0.77 1.2
330,976 - 0.3
331,009 + 0.9
331,121 - 1.0
331,136 - -0.1
331,146 - 0.4
331,203 + -0.5
331,272 + 0.1
331,281 + 0.1
331,288 - 0.5
331,305 + -0.4
331,315 + 0.5
331,325 - 0.3
331,330 + 1.2
331,343 - -0.8
331,351 - -0.1
331,351 - 1.6
331,352 - 1.0
331,359 + 1.6
331,359 - 0.2
331,360 + -0.2
331,364 - -0.1
331,365 - -0.8
331,373 - 1.5
331,379 + 1.2
331,384 + 0.4
331,394 + 0.6
331,496 + 0.7
331,506 - 0.1
331,522 - 0.1
331,535 + -0.4
331,636 - 0.8
331,667 + 0.2
331,767 + 16431 mRNA_8063 0.12 -0.2
331,780 - 16431 mRNA_8063 0.13 0.1
332,644 - 16431 mRNA_8063 0.69 -1.2
332,655 + 16431 mRNA_8063 0.70 1.3
332,667 + 16431 mRNA_8063 0.71 2.7
332,796 - 16431 mRNA_8063 0.79 1.4
332,801 - 16431 mRNA_8063 0.80 -1.9
332,930 - 16431 mRNA_8063 0.88 -0.8
332,950 + 16431 mRNA_8063 0.89 0.3
333,080 - 0.7
333,111 + -1.0
333,126 - -0.3
333,210 - -0.6
333,229 + -0.1
333,231 + -2.0
333,254 + 0.6
333,262 - 0.2
333,264 + 0.4
333,269 - 1.8
333,273 + 0.5
333,278 - 0.4
333,279 + -0.4
333,374 - 0.2
333,398 + -0.2
333,412 - -0.3
333,427 + 3.1
333,522 - -0.5
333,543 - 1.6
333,548 + -0.1
333,548 + 0.7
333,579 - -0.1
333,599 - 0.4
333,721 + 16432 mRNA_8064 0.12 -1.3
333,835 - 16432 mRNA_8064 0.17 0.3
333,850 - 16432 mRNA_8064 0.18 -0.9
333,860 + 16432 mRNA_8064 0.18 -0.9
333,989 + 16432 mRNA_8064 0.23 -1.3
334,054 + 16432 mRNA_8064 0.26 0.7