Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8049

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8048: 16416 - Hypothetical Protein, at 299465 to 299980 16416 mRNA_8049: 16417 - SUPERFAMILY--SSF52047, at 300681 to 303799 16417 mRNA_8050: 16418 - K02943 RP-LP2, RPLP2 large subunit ribosomal protein LP2, at 304336 to 304986 16418

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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299,950 - 1.0
300,232 - -0.2
300,348 - -1.6
300,564 - -0.3
301,299 + 16417 mRNA_8049 0.20 1.4
301,318 + 16417 mRNA_8049 0.20 0.6
301,449 + 16417 mRNA_8049 0.25 0.6
301,486 + 16417 mRNA_8049 0.26 -0.5
301,495 + 16417 mRNA_8049 0.26 1.9
301,578 - 16417 mRNA_8049 0.29 0.1
301,751 - 16417 mRNA_8049 0.34 0.3
301,764 + 16417 mRNA_8049 0.35 1.2
301,778 + 16417 mRNA_8049 0.35 -0.7
301,885 - 16417 mRNA_8049 0.39 0.7
301,889 + 16417 mRNA_8049 0.39 -1.7
301,897 + 16417 mRNA_8049 0.39 0.3
302,196 - 16417 mRNA_8049 0.49 0.6
302,231 + 16417 mRNA_8049 0.50 1.4
302,369 + 16417 mRNA_8049 0.54 -0.1
302,506 - 16417 mRNA_8049 0.59 1.1
302,651 + 16417 mRNA_8049 0.63 1.4
302,779 - 16417 mRNA_8049 0.67 0.8
302,978 + 16417 mRNA_8049 0.74 0.9
303,522 + -0.1
303,535 + 0.5
303,662 - -0.5
303,719 + -0.2
303,831 - 0.2
303,969 - 0.4
303,971 - 1.2
304,027 - 1.6
304,044 + -0.2
304,080 - -0.5
304,121 + -0.3
304,125 + -0.4
304,294 + 0.1