Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8035

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272460 to 275670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275930 to 278853 16403 mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279404 to 281646 16404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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275,072 - 16402 mRNA_8034 0.81 0.5
275,104 - 16402 mRNA_8034 0.82 -1.1
275,223 + 16402 mRNA_8034 0.86 0.3
275,384 - -0.8
275,417 - 1.3
275,435 + -0.7
275,541 - -0.8
275,563 - -0.4
275,564 - 0.3
275,565 - -0.3
275,571 - 0.1
275,610 - -0.3
275,613 + -1.9
275,633 + 1.5
275,705 - 1.2
275,709 - 0.8
275,713 - 1.0
275,716 + 0.0
275,718 - -0.6
275,723 - 2.5
275,723 - 1.6
275,726 + 1.7
275,735 + -0.9
275,742 - -1.2
275,763 - -0.3
275,763 + 0.5
276,030 + -0.0
276,083 - -0.3
276,166 - 1.6
276,201 - -0.1
276,456 + 16403 mRNA_8035 0.18 0.7
276,510 - 16403 mRNA_8035 0.20 -0.6
276,891 + 16403 mRNA_8035 0.33 1.7
277,186 + 16403 mRNA_8035 0.43 -0.8
277,456 - 16403 mRNA_8035 0.52 1.3
277,466 + 16403 mRNA_8035 0.53 0.0
277,616 - 16403 mRNA_8035 0.58 1.2
277,634 + 16403 mRNA_8035 0.58 1.7
277,779 + 16403 mRNA_8035 0.63 -0.5
277,846 - 16403 mRNA_8035 0.66 0.5
277,849 + 16403 mRNA_8035 0.66 -0.5
278,213 + 16403 mRNA_8035 0.78 1.2
278,602 - -0.1
278,682 - -0.4
278,919 - -0.3
279,072 - -1.4
279,079 + 0.6
279,221 - -1.0
279,221 - -0.4
279,241 + -1.1
279,250 - 0.4
279,348 + -0.5
279,359 - 0.1
279,360 - 0.2
279,366 + -0.7
279,375 + 0.2
279,379 + -1.0