Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8026

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243826 to 244717 16395

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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238,894 - 0.6
238,928 - -0.8
239,064 + 0.6
239,345 + -1.1
239,352 + 0.3
239,353 + -0.5
239,357 + 1.6
239,374 + -1.2
239,484 + 1.7
239,490 - -0.1
239,490 - 0.3
239,496 - 1.6
239,507 - 0.9
239,511 - -0.2
239,525 + 1.2
239,534 + -1.7
239,631 - 0.5
239,678 + -2.1
239,698 + -0.2
239,837 + 1.9
239,842 + 0.6
239,843 + -0.0
239,848 - 0.2
239,849 + -0.9
239,866 - 1.0
239,979 + 16394 mRNA_8026 0.10 1.5
240,060 + 16394 mRNA_8026 0.12 -0.4
240,092 + 16394 mRNA_8026 0.13 1.9
240,125 - 16394 mRNA_8026 0.14 1.7
240,263 - 16394 mRNA_8026 0.17 -0.6
240,268 + 16394 mRNA_8026 0.17 -0.6
240,402 - 16394 mRNA_8026 0.21 0.3
240,540 - 16394 mRNA_8026 0.24 1.5
240,860 - 16394 mRNA_8026 0.32 0.4
241,592 + 16394 mRNA_8026 0.51 1.0
241,676 - 16394 mRNA_8026 0.53 1.6
241,723 - 16394 mRNA_8026 0.54 -1.0
241,761 - 16394 mRNA_8026 0.55 -0.6
241,769 + 16394 mRNA_8026 0.55 -0.2
241,863 + 16394 mRNA_8026 0.57 0.5
241,904 + 16394 mRNA_8026 0.58 1.2
241,958 - 16394 mRNA_8026 0.60 0.3
241,958 - 16394 mRNA_8026 0.60 1.5
242,232 + 16394 mRNA_8026 0.67 -1.8
242,276 - 16394 mRNA_8026 0.68 0.4
242,360 - 16394 mRNA_8026 0.70 1.2
242,445 - 16394 mRNA_8026 0.72 1.8
242,591 - 16394 mRNA_8026 0.76 0.1
242,713 - 16394 mRNA_8026 0.79 1.7
242,776 - 16394 mRNA_8026 0.80 0.4
242,795 + 16394 mRNA_8026 0.81 -0.2
242,890 - 16394 mRNA_8026 0.83 1.1
243,022 - 16394 mRNA_8026 0.86 -0.4
243,065 - 16394 mRNA_8026 0.88 0.2
243,107 - 16394 mRNA_8026 0.89 -0.4
243,115 + 16394 mRNA_8026 0.89 0.5
243,180 + 0.2
243,214 + 0.7
243,245 - -1.8
243,255 + -0.0
243,320 + 0.6
243,341 + -0.3
243,356 - 0.4
243,503 - -1.3
243,505 + -1.3
243,515 - -0.6
243,553 + 0.3
243,659 + 1.5
243,827 - -0.5
243,974 - 16395 mRNA_8027 0.17 -0.8
243,976 + 16395 mRNA_8027 0.17 -0.4
243,978 - 16395 mRNA_8027 0.17 1.9
244,011 - 16395 mRNA_8027 0.21 0.4
244,081 - 16395 mRNA_8027 0.29 -0.2
244,106 - 16395 mRNA_8027 0.31 -0.4
244,141 - 16395 mRNA_8027 0.35 0.2