Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8001

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180086 to 183760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183994 to 185593 16369 mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186103 to 188392 16370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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183,029 - 16368 mRNA_8000 0.80 1.4
183,068 + 16368 mRNA_8000 0.81 1.4
183,072 - 16368 mRNA_8000 0.81 1.3
183,453 + -1.6
183,668 + 0.1
183,933 - -0.5
183,934 + -0.1
184,078 - -0.4
184,215 - 16369 mRNA_8001 0.14 -0.0
184,251 + 16369 mRNA_8001 0.16 -0.7
184,256 - 16369 mRNA_8001 0.16 -0.1
184,389 - 16369 mRNA_8001 0.25 0.6
184,432 + 16369 mRNA_8001 0.27 -0.7
184,522 + 16369 mRNA_8001 0.33 -0.1
185,395 + 16369 mRNA_8001 0.88 1.0
185,425 - 16369 mRNA_8001 0.89 -0.4
185,544 + -0.2
185,640 - -1.0
185,687 + -0.6
185,689 - 1.8
185,696 + -0.6
185,754 + 0.8
185,775 - 0.3
185,786 + -0.8
185,845 - 0.2
185,881 - -0.3
185,918 + -0.9
185,926 + -0.1
185,933 + 0.3
185,941 + 3.0
185,953 + 1.3
186,134 - 0.0
186,181 + -1.2
186,284 - -0.1
186,332 - 16370 mRNA_8002 0.10 0.4
186,396 - 16370 mRNA_8002 0.13 0.8
186,423 + 16370 mRNA_8002 0.14 -0.3