Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7977

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7976: 16344 - BLAST carbohydrate-binding module family 13 protein [Schizo..., at 131943 to 133643 16344 mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134234 to 135920 16345 mRNA_7978: 16346 - K13341 PEX7, PTS2R peroxin-7, at 136245 to 137738 16346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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133,458 - 16344 mRNA_7976 0.89 2.2
133,574 + 0.9
133,764 + 0.8
133,801 + 1.9
133,804 - -0.0
133,809 - 1.0
133,819 + -0.0
133,842 + -0.6
133,851 + -0.5
133,903 + 0.4
133,963 - 1.1
134,017 - -0.8
134,041 - -0.6
134,051 + -0.4
134,051 + 0.9
134,068 - 0.6
134,085 - -0.3
134,101 - 0.5
134,103 - 0.4
134,111 + 0.1
134,118 - 1.0
134,126 - -1.3
134,126 - -0.4
134,128 + 0.2
134,130 - -0.5
134,130 - 0.8
134,132 - 0.3
134,132 - 0.8
134,134 - -2.3
134,136 - 1.0
134,148 + 0.1
134,148 + -1.7
134,148 + 1.5
134,149 + -0.9
134,153 - 0.4
134,155 + -0.3
134,301 - -0.5
134,453 + 16345 mRNA_7977 0.13 0.6
134,855 + 16345 mRNA_7977 0.37 -0.3
134,873 - 16345 mRNA_7977 0.38 0.9
135,003 + 16345 mRNA_7977 0.46 -0.4
135,031 - 16345 mRNA_7977 0.47 -0.3
135,439 + 16345 mRNA_7977 0.71 1.3
135,469 + 16345 mRNA_7977 0.73 -1.0
136,191 + 1.3
136,197 + 0.3
136,354 + 0.8
136,527 - 16346 mRNA_7978 0.19 2.0
136,792 + 16346 mRNA_7978 0.37 -0.7