Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7899

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7898: 16266 - K12660 rhmA 2-dehydro-3-deoxy-L-rhamnonate aldolase, at 1328005 to 1329095 16266 mRNA_7899: 16267 - K00618 E2.3.1.1 amino-acid N-acetyltransferase, at 1329365 to 1331583 16267 mRNA_7900: 16268 - Hypothetical Protein, at 1332070 to 1333846 16268

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,328,515 - 16266 mRNA_7898 0.47 -0.4
1,328,961 - 16266 mRNA_7898 0.88 0.0
1,329,098 - -0.3
1,329,201 + 0.7
1,329,216 - -0.1
1,329,278 + -0.1
1,329,310 - 0.1
1,329,591 - 16267 mRNA_7899 0.10 0.4
1,329,636 - 16267 mRNA_7899 0.12 0.5
1,329,834 + 16267 mRNA_7899 0.21 -3.7
1,329,980 + 16267 mRNA_7899 0.28 -3.8
1,330,015 + 16267 mRNA_7899 0.29 -1.3
1,330,420 + 16267 mRNA_7899 0.48 -0.7
1,330,533 - 16267 mRNA_7899 0.53 -4.0
1,330,545 - 16267 mRNA_7899 0.53 -2.6
1,330,561 - 16267 mRNA_7899 0.54 0.3
1,331,457 + -1.6
1,331,536 + -1.9
1,331,540 - -3.0
1,331,556 - 0.4
1,331,567 - -0.2
1,331,585 + -2.3
1,331,735 - -2.2
1,331,742 - 1.1
1,331,770 + 0.8
1,331,776 + 1.7
1,331,821 - 0.4
1,331,835 - 0.5
1,331,849 + 0.9
1,331,854 + 0.6
1,331,862 - 1.5
1,331,880 - -0.3
1,331,897 + 0.4
1,331,906 - 0.5
1,331,913 + 1.0
1,332,015 + 1.1
1,332,177 + 1.7
1,332,197 + 1.3