Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7781

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1045975 to 1050892 16148 mRNA_7781: 16149 - K18664 SLH1 antiviral helicase SLH1, at 1050929 to 1056955 16149 mRNA_7782: 16150 - Hypothetical Protein, at 1057267 to 1057848 16150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,050,055 - 16148 mRNA_7780 0.83 0.1
1,050,111 - 16148 mRNA_7780 0.84 0.1
1,050,220 + 16148 mRNA_7780 0.86 0.0
1,050,549 + 0.7
1,050,689 + -1.7
1,050,908 - 0.9
1,050,943 - 0.3
1,051,013 - 1.5
1,051,022 + 0.5
1,051,085 + -0.5
1,051,197 - 2.3
1,051,302 + -0.3
1,051,304 - 1.7
1,051,304 - 0.1
1,051,315 + 0.7
1,051,504 - -0.3
1,051,537 + 16149 mRNA_7781 0.10 -0.0
1,051,656 + 16149 mRNA_7781 0.12 -0.3
1,051,769 + 16149 mRNA_7781 0.14 0.5
1,051,770 - 16149 mRNA_7781 0.14 1.3
1,051,783 + 16149 mRNA_7781 0.14 -0.3
1,051,786 - 16149 mRNA_7781 0.14 2.2
1,052,060 - 16149 mRNA_7781 0.19 -0.3
1,052,267 - 16149 mRNA_7781 0.22 -0.2
1,052,366 + 16149 mRNA_7781 0.24 -0.0
1,052,412 + 16149 mRNA_7781 0.25 1.2
1,052,619 - 16149 mRNA_7781 0.28 -1.2
1,052,828 - 16149 mRNA_7781 0.32 -1.8
1,053,100 - 16149 mRNA_7781 0.36 0.8
1,053,284 + 16149 mRNA_7781 0.39 -0.2
1,053,402 - 16149 mRNA_7781 0.41 1.5
1,053,818 - 16149 mRNA_7781 0.48 0.6
1,053,982 - 16149 mRNA_7781 0.51 -0.7
1,053,992 + 16149 mRNA_7781 0.51 -1.2
1,054,403 - 16149 mRNA_7781 0.58 0.2
1,054,493 - 16149 mRNA_7781 0.59 -0.6
1,054,737 - 16149 mRNA_7781 0.63 -0.9
1,054,889 - 16149 mRNA_7781 0.66 -1.2
1,054,891 + 16149 mRNA_7781 0.66 -0.6
1,054,963 - 16149 mRNA_7781 0.67 0.5
1,055,110 + 16149 mRNA_7781 0.69 0.9
1,055,187 + 16149 mRNA_7781 0.71 -0.0
1,055,934 - 16149 mRNA_7781 0.83 1.6
1,056,121 + 16149 mRNA_7781 0.86 0.0
1,056,126 + 16149 mRNA_7781 0.86 0.2
1,056,449 - -0.9
1,056,486 + 0.3
1,056,591 - -0.4
1,056,740 + -0.3
1,056,757 - 0.8
1,056,778 + 0.0
1,056,899 + -0.0
1,056,925 - -0.0
1,057,042 - 0.7
1,057,066 - 1.2
1,057,067 + 0.7
1,057,083 - 1.2
1,057,084 + 0.2
1,057,104 + 0.6
1,057,179 - 1.4
1,057,211 + 0.9
1,057,212 + -0.2
1,057,214 - -1.1
1,057,324 + -0.9
1,057,780 - 16150 mRNA_7782 0.88 -0.8
1,057,783 - 16150 mRNA_7782 0.89 -0.0
1,057,942 + -0.6