Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7739

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960464 to 961733 16106 mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962010 to 966625 16107 mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966858 to 968054 16108

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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961,150 + 16106 mRNA_7738 0.54 -0.1
961,157 - 16106 mRNA_7738 0.55 -1.2
961,215 + 16106 mRNA_7738 0.59 -1.0
961,584 + 16106 mRNA_7738 0.88 0.9
961,649 - -0.2
961,655 + 0.5
961,658 - 1.3
961,912 + 1.3
962,030 - 1.9
962,620 - 16107 mRNA_7739 0.13 -1.4
962,813 + 16107 mRNA_7739 0.17 -2.2
962,954 - 16107 mRNA_7739 0.20 -1.3
962,994 + 16107 mRNA_7739 0.21 -1.0
963,092 + 16107 mRNA_7739 0.23 -1.4
963,433 + 16107 mRNA_7739 0.31 -1.5
963,525 + 16107 mRNA_7739 0.33 -1.1
963,529 - 16107 mRNA_7739 0.33 -0.9
963,573 + 16107 mRNA_7739 0.34 -1.8
963,806 + 16107 mRNA_7739 0.39 0.9
963,978 + 16107 mRNA_7739 0.43 -1.4
963,990 + 16107 mRNA_7739 0.43 -1.5
964,006 - 16107 mRNA_7739 0.43 0.7
964,007 + 16107 mRNA_7739 0.43 0.9
964,097 - 16107 mRNA_7739 0.45 -1.7
964,283 + 16107 mRNA_7739 0.49 0.8
965,172 + 16107 mRNA_7739 0.69 -2.1
965,195 + 16107 mRNA_7739 0.69 -0.7
965,437 + 16107 mRNA_7739 0.74 -0.4
965,935 - 16107 mRNA_7739 0.85 -1.0
966,019 + 16107 mRNA_7739 0.87 -0.8
966,040 - 16107 mRNA_7739 0.87 -2.1
966,048 + 16107 mRNA_7739 0.87 -1.4
966,106 - 16107 mRNA_7739 0.89 -1.9
966,150 - 16107 mRNA_7739 0.90 -3.2
966,156 + 16107 mRNA_7739 0.90 -3.5
966,204 - 0.2
966,204 - -1.2
966,220 + -1.8
966,242 - -1.1
966,246 + 0.3
966,350 + -1.6
966,400 - -1.5
966,510 + -1.2
966,759 + 0.2
966,763 + -1.0
966,768 + -0.2
966,935 - -0.1
966,949 - 1.1
966,997 + 16108 mRNA_7740 0.12 -1.3
966,997 + 16108 mRNA_7740 0.12 0.8
966,997 + 16108 mRNA_7740 0.12 0.8
966,997 + 16108 mRNA_7740 0.12 0.0
967,114 - 16108 mRNA_7740 0.21 0.3
967,193 - 16108 mRNA_7740 0.28 1.3
967,215 + 16108 mRNA_7740 0.30 0.5
967,288 + 16108 mRNA_7740 0.36 0.2