Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7651

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7650: 16018 - K08008 NOX, GP91 NADPH oxidase, at 765571 to 768508 16018 mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769234 to 769814 16019 mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770131 to 772818 16020

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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768,270 - 0.6
768,454 + 1.1
768,454 - 1.2
768,588 - 1.5
768,896 - 0.7
768,908 + -1.5
768,922 + -0.4
769,015 - 0.2
769,027 - 1.1
769,066 + -1.2
769,177 - 0.1
769,194 + 1.1
769,320 - 16019 mRNA_7651 0.15 0.1
769,340 - 16019 mRNA_7651 0.18 -0.5
769,341 + 16019 mRNA_7651 0.18 -1.7
769,372 + 16019 mRNA_7651 0.24 0.8
769,498 - 16019 mRNA_7651 0.45 1.8
769,941 - 0.1
770,072 + 1.4
770,243 + 0.4
770,281 + 0.4
770,373 - 0.7
770,386 - 0.1
770,681 + 16020 mRNA_7652 0.20 0.2
770,690 + 16020 mRNA_7652 0.21 1.5