Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7632

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721192 to 722141 15999 mRNA_7632: 16000 - KOG0383 Predicted helicase, at 722943 to 730457 16000 mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730629 to 733694 16001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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722,113 + -1.3
722,151 + 0.4
722,160 + -0.5
722,301 + 0.1
722,410 - -0.3
722,575 - 3.5
722,704 - -0.3
722,773 - -0.3
722,828 - 0.4
722,866 + 0.2
723,164 + 1.7
723,187 - 0.0
723,474 + -0.8
723,594 + 0.6
725,353 + 16000 mRNA_7632 0.32 0.0
725,520 - 16000 mRNA_7632 0.34 -0.1
725,724 + 16000 mRNA_7632 0.37 1.2
726,468 + 16000 mRNA_7632 0.47 0.0
727,097 + 16000 mRNA_7632 0.55 -0.1
727,522 - 16000 mRNA_7632 0.61 0.5
727,788 - 16000 mRNA_7632 0.64 1.6
727,822 - 16000 mRNA_7632 0.65 0.1
727,951 + 16000 mRNA_7632 0.67 1.1
727,999 - 16000 mRNA_7632 0.67 0.6
728,126 - 16000 mRNA_7632 0.69 0.3
728,280 - 16000 mRNA_7632 0.71 0.6
728,345 - 16000 mRNA_7632 0.72 0.7
728,647 + 16000 mRNA_7632 0.76 0.5
729,014 + 16000 mRNA_7632 0.81 0.2
729,090 + 16000 mRNA_7632 0.82 0.3
729,376 - 16000 mRNA_7632 0.86 -1.3
729,893 + 2.7
730,271 - 1.5
730,580 + -2.0
730,649 + 2.3
730,663 - 2.0
730,675 - 0.2
730,949 + 16001 mRNA_7633 0.10 1.3
731,011 + 16001 mRNA_7633 0.12 -0.0
731,035 + 16001 mRNA_7633 0.13 -0.2
731,132 - 16001 mRNA_7633 0.16 0.7