Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7608

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665409 to 666288 15975 mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666565 to 667853 15976 mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667919 to 668964 15977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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665,668 + 15975 mRNA_7607 0.29 -0.6
665,673 - 15975 mRNA_7607 0.30 -1.2
665,679 + 15975 mRNA_7607 0.31 -0.2
665,685 + 15975 mRNA_7607 0.31 -0.2
665,834 - 15975 mRNA_7607 0.48 0.4
666,224 - 0.5
666,667 - 1.0
666,668 + 0.9
666,675 + 1.1
666,676 + 0.5
666,678 + 1.7
666,708 - 15976 mRNA_7608 0.11 0.2
666,841 + 15976 mRNA_7608 0.21 0.1
667,141 + 15976 mRNA_7608 0.45 1.1
667,180 + 15976 mRNA_7608 0.48 0.7
667,417 + 15976 mRNA_7608 0.66 0.5
667,427 - 15976 mRNA_7608 0.67 0.6
667,698 - 15976 mRNA_7608 0.88 0.1
667,799 + 0.9
668,433 - 15977 mRNA_7609 0.49 1.5