Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7551

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541914 to 542318 15918 mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542848 to 546528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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542,784 - 0.8
542,795 - -0.4
542,799 + -0.7
542,930 - -0.7
542,947 + -0.5
542,950 + 0.1
542,958 - -1.4
543,214 + -0.3
543,217 - 15919 mRNA_7551 0.10 0.0
543,248 - 15919 mRNA_7551 0.11 -0.1
543,392 - 15919 mRNA_7551 0.15 0.5
543,409 - 15919 mRNA_7551 0.15 1.0
543,688 + 15919 mRNA_7551 0.23 -0.5
543,959 + 15919 mRNA_7551 0.30 -0.3
543,960 - 15919 mRNA_7551 0.30 -1.0
543,981 - 15919 mRNA_7551 0.31 2.1
543,997 + 15919 mRNA_7551 0.31 0.4
544,132 - 15919 mRNA_7551 0.35 1.2
544,133 + 15919 mRNA_7551 0.35 -0.3
544,145 + 15919 mRNA_7551 0.35 0.7
544,259 - 15919 mRNA_7551 0.38 -2.8
545,303 + 15919 mRNA_7551 0.67 -0.4
546,002 - 15919 mRNA_7551 0.86 -0.4
546,120 - 15919 mRNA_7551 0.89 -0.8
546,135 - 15919 mRNA_7551 0.89 -1.8
546,148 + 15919 mRNA_7551 0.90 -1.2
546,238 + -1.3
546,282 + 1.1
546,741 + -0.9
546,868 - 0.7
546,877 - 15920 mRNA_7552 0.10 -0.3
547,464 - 0.7