Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7525

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495321 to 495867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495978 to 498115 15894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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495,157 - 0.3
495,613 - 15893 mRNA_7525 0.53 -0.4
495,637 + 15893 mRNA_7525 0.58 0.2
495,738 + 15893 mRNA_7525 0.76 2.0
495,756 + 15893 mRNA_7525 0.80 0.8
495,765 + 15893 mRNA_7525 0.81 1.6
495,890 + -0.5
495,893 + 1.2
495,896 + -0.3
495,897 + 0.7
495,914 - -0.2
495,929 - 1.4
495,935 - -1.2
495,945 - 1.7
495,946 - -0.2
495,951 - 0.6
496,056 - -0.6
496,075 + 2.2
496,091 + -0.8
496,214 - 15894 mRNA_7526 0.11 -0.9
496,652 - 15894 mRNA_7526 0.32 -3.0