Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7518

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7517: 15885 - Hypothetical Protein, at 476971 to 478237 15885 mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478378 to 480820 15886 mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481240 to 482191 15887

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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477,471 - 15885 mRNA_7517 0.39 1.2
478,343 + 0.2
478,383 + 1.2
478,415 + 0.4
478,513 + 0.8
478,518 + -0.1
478,550 - 0.5
478,565 + -0.8
478,572 + -1.6
478,572 + 0.1
478,578 - 0.7
478,582 + 0.1
478,704 + 15886 mRNA_7518 0.13 0.1
478,714 - 15886 mRNA_7518 0.14 1.0
478,727 + 15886 mRNA_7518 0.14 -0.0
478,734 + 15886 mRNA_7518 0.15 0.7
478,742 + 15886 mRNA_7518 0.15 0.6
478,886 + 15886 mRNA_7518 0.21 0.4
479,028 + 15886 mRNA_7518 0.27 1.0
479,290 + 15886 mRNA_7518 0.37 -0.3
479,450 - 15886 mRNA_7518 0.44 1.0
480,011 - 15886 mRNA_7518 0.67 -0.0
480,191 + 15886 mRNA_7518 0.74 -0.1
480,738 + -0.1
480,907 + 0.1
480,918 - 0.1
481,615 - 15887 mRNA_7519 0.39 1.5