Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7488

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403840 to 407882 15856 mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408031 to 409638 15857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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403,436 - -0.0
403,525 - 0.7
403,590 + -0.1
404,314 + 15856 mRNA_7488 0.12 0.8
404,334 - 15856 mRNA_7488 0.12 -0.8
404,471 - 15856 mRNA_7488 0.16 0.2
404,495 - 15856 mRNA_7488 0.16 -0.2
404,635 - 15856 mRNA_7488 0.20 -0.2
404,650 + 15856 mRNA_7488 0.20 0.5
404,724 + 15856 mRNA_7488 0.22 0.5
405,356 + 15856 mRNA_7488 0.37 1.5
405,528 + 15856 mRNA_7488 0.42 0.7
405,805 - 15856 mRNA_7488 0.49 1.2
405,953 - 15856 mRNA_7488 0.52 0.4
406,012 + 15856 mRNA_7488 0.54 0.5
406,140 - 15856 mRNA_7488 0.57 1.3
406,336 - 15856 mRNA_7488 0.62 -0.4
406,378 + 15856 mRNA_7488 0.63 1.3
406,589 + 15856 mRNA_7488 0.68 0.4
407,117 + 15856 mRNA_7488 0.81 0.3
407,162 + 15856 mRNA_7488 0.82 2.6
407,556 - 1.2
407,566 - -0.1
407,856 - -0.8
407,902 - -0.2
408,016 + 0.5
408,330 + 15857 mRNA_7489 0.19 -1.3
408,409 - 15857 mRNA_7489 0.24 0.6
408,438 - 15857 mRNA_7489 0.25 0.3
408,462 - 15857 mRNA_7489 0.27 -1.2