Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7485

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7484: 15852 - K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D), at 392851 to 393989 15852 mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394901 to 397101 15853 mRNA_7486: 15854 - K08287 E2.7.12.1 dual-specificity kinase, at 397692 to 399920 15854

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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393,966 - -0.7
393,982 + -0.0
393,983 - 0.1
393,984 + -0.9
393,988 + 0.2
394,000 + -0.7
394,114 - -0.2
394,116 - -0.4
394,134 + -0.2
394,139 + 0.1
394,154 + 0.1
394,262 - 1.4
394,264 - -0.6
394,283 - -0.4
394,285 - -1.4
394,299 - -0.2
394,302 - -0.8
394,306 + 0.1
394,310 + -0.1
394,313 + 0.3
394,324 + 0.0
394,435 + -0.1
394,473 + 0.7
394,598 + 0.8
394,602 + 1.7
394,620 + -1.0
394,891 + 1.5
394,898 + -0.5
395,011 + 0.1
395,794 + 15853 mRNA_7485 0.41 -0.4
395,882 - 15853 mRNA_7485 0.45 0.1
395,887 - 15853 mRNA_7485 0.45 -1.5
396,325 - 15853 mRNA_7485 0.65 1.5
396,523 + 15853 mRNA_7485 0.74 0.8
396,655 - 15853 mRNA_7485 0.80 2.0
396,834 - 15853 mRNA_7485 0.88 -0.0
396,963 + 1.0
397,419 + 0.1
397,569 - 0.8
397,592 + 0.5
397,728 + 0.4
397,810 + 0.2
397,887 - -1.7