Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7401

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187404 to 189530 15768 mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190009 to 193201 15769 mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193334 to 195902 15770

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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189,412 - -0.5
189,450 + 1.7
189,615 - 0.4
189,754 + 2.7
189,857 + 0.2
189,860 - 0.5
189,860 - -0.6
189,862 + 0.2
189,864 + -0.0
189,865 - 1.4
189,866 - -0.2
189,871 - -0.0
189,872 + -1.0
189,876 - 0.1
189,877 - -0.5
189,882 + 0.6
189,883 + 0.1
189,883 + 0.5
190,002 - 0.2
190,028 - 0.8
190,032 + 0.4
190,190 + 0.0
190,309 - 0.9
190,323 + 1.0
190,908 + 15769 mRNA_7401 0.28 -0.0
191,014 + 15769 mRNA_7401 0.31 1.5
191,212 - 15769 mRNA_7401 0.38 2.2
191,469 + 15769 mRNA_7401 0.46 0.9
191,491 + 15769 mRNA_7401 0.46 0.3
191,493 + 15769 mRNA_7401 0.46 -0.5
192,224 - 15769 mRNA_7401 0.69 0.4
192,251 - 15769 mRNA_7401 0.70 1.1
192,326 + 15769 mRNA_7401 0.73 -2.4
192,697 - 15769 mRNA_7401 0.84 -0.0
192,767 - 15769 mRNA_7401 0.86 -1.2
193,315 - 0.5
193,326 + -0.3
193,330 + -0.1
193,442 + 0.1
193,450 - 0.6
193,468 + 0.7
193,636 + 15770 mRNA_7402 0.12 0.1
194,169 - 15770 mRNA_7402 0.33 0.2