Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7286

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7285: 15653 - HMMPfam-GPR1/FUN34/yaaH family-PF01184,ProSitePatterns-GPR1/FUN34/yaaH family signature.-PS01114, at 1296567 to 1298156 15653 mRNA_7286: 15654 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 1298455 to 1300194 15654 mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1300523 to 1304371 15655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,297,553 - 15653 mRNA_7285 0.62 -1.3
1,297,829 - 15653 mRNA_7285 0.79 0.2
1,297,837 - 15653 mRNA_7285 0.80 0.1
1,297,882 - 15653 mRNA_7285 0.83 -1.9
1,298,142 - 0.2
1,298,168 - 0.1
1,298,178 - 0.0
1,298,760 + 15654 mRNA_7286 0.18 0.4
1,298,891 - 15654 mRNA_7286 0.25 1.1
1,299,217 - 15654 mRNA_7286 0.44 -0.2
1,299,326 + 15654 mRNA_7286 0.50 2.1
1,299,656 - 15654 mRNA_7286 0.69 0.8
1,299,669 - 15654 mRNA_7286 0.70 0.1
1,299,771 - 15654 mRNA_7286 0.76 -0.1
1,299,943 - 15654 mRNA_7286 0.86 1.0
1,300,039 - 0.3
1,300,063 + -0.7
1,300,083 - 1.2
1,300,098 - 0.2
1,300,212 + 1.2
1,300,239 - -0.9
1,300,394 + -0.6
1,300,531 - -0.1
1,300,532 - -1.8
1,300,667 - -0.4
1,301,131 + 15655 mRNA_7287 0.16 0.6
1,301,167 + 15655 mRNA_7287 0.17 1.5
1,301,177 - 15655 mRNA_7287 0.17 1.6