Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7199

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7198: 15566 - Hypothetical Protein, at 1107641 to 1108204 15566 mRNA_7199: 15567 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 1108363 to 1109217 15567 mRNA_7200: 15568 - K14816 REI1 pre-60S factor REI1, at 1109776 to 1111554 15568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,107,374 - 1.1
1,107,848 - 15566 mRNA_7198 0.37 0.5
1,108,095 - 15566 mRNA_7198 0.80 0.3
1,108,128 + 15566 mRNA_7198 0.86 1.7
1,108,140 + 15566 mRNA_7198 0.88 0.2
1,108,252 - 1.8
1,108,259 - 0.9
1,108,260 - -0.6
1,108,270 - -0.4
1,108,274 - 0.0
1,108,274 - 1.1
1,108,277 + -0.0
1,108,295 + 1.7
1,108,743 + 15567 mRNA_7199 0.44 0.4
1,108,861 + 15567 mRNA_7199 0.58 0.3
1,109,003 + 15567 mRNA_7199 0.75 -0.3
1,109,008 - 15567 mRNA_7199 0.75 -0.4
1,109,285 + 1.3
1,109,415 - -0.4
1,109,435 - 0.8
1,109,435 + 0.2
1,109,440 + 0.9
1,109,440 + 1.2
1,109,446 - -0.8
1,109,449 + 0.0
1,109,454 + 3.1
1,109,465 + 0.9
1,109,580 + -1.8
1,109,754 + 0.0