Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7141

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971914 to 976417 15508 mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976528 to 979510 15509 mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979628 to 983826 15510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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975,755 + 15508 mRNA_7140 0.85 -1.6
976,065 - 0.4
976,209 - -0.8
976,314 - -0.1
976,380 + 1.4
976,501 - -0.4
976,519 + 0.3
976,519 + 0.3
976,635 - 0.7
976,636 - -0.6
976,824 + 1.2
976,933 - 15509 mRNA_7141 0.14 0.0
976,944 - 15509 mRNA_7141 0.14 0.1
976,952 + 15509 mRNA_7141 0.14 0.4
976,953 + 15509 mRNA_7141 0.14 1.7
976,967 - 15509 mRNA_7141 0.15 1.3
977,587 - 15509 mRNA_7141 0.36 -0.2
977,815 + 15509 mRNA_7141 0.43 0.1
978,228 - 15509 mRNA_7141 0.57 -0.5
978,545 + 15509 mRNA_7141 0.68 0.5
978,714 - 15509 mRNA_7141 0.73 -3.2
978,844 + 15509 mRNA_7141 0.78 0.1
979,150 + 15509 mRNA_7141 0.88 1.6
979,194 - 15509 mRNA_7141 0.89 -0.2
979,556 - 1.5
979,793 + 0.2
979,983 - -0.1
980,035 + -0.2
980,101 + 15510 mRNA_7142 0.11 1.2
980,103 - 15510 mRNA_7142 0.11 -0.3
980,283 - 15510 mRNA_7142 0.16 0.1