Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7108

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897416 to 899091 15475 mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899228 to 903559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903883 to 906158 15477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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898,355 - 15475 mRNA_7107 0.56 -0.3
898,923 - 15475 mRNA_7107 0.90 -0.1
899,064 - -1.5
899,208 + 0.1
899,315 + -0.7
899,383 - 0.8
899,498 - -0.5
899,551 - 0.7
899,897 + 15476 mRNA_7108 0.15 1.4
899,928 - 15476 mRNA_7108 0.16 -0.7
900,230 + 15476 mRNA_7108 0.23 -0.2
900,351 - 15476 mRNA_7108 0.26 -0.6
900,396 + 15476 mRNA_7108 0.27 0.6
900,873 + 15476 mRNA_7108 0.38 -0.1
901,004 + 15476 mRNA_7108 0.41 1.7
901,120 - 15476 mRNA_7108 0.44 0.6
901,375 + 15476 mRNA_7108 0.50 4.1
901,533 + 15476 mRNA_7108 0.53 -0.0
901,718 + 15476 mRNA_7108 0.57 0.1
901,823 + 15476 mRNA_7108 0.60 0.1
901,853 + 15476 mRNA_7108 0.61 0.9
902,585 + 15476 mRNA_7108 0.77 0.2
902,674 + 15476 mRNA_7108 0.80 0.4
903,092 + 15476 mRNA_7108 0.89 0.8
903,105 + 15476 mRNA_7108 0.89 -1.3
903,248 - 0.6
903,294 + -0.2
903,390 + 0.9
903,408 - 1.1
903,427 + -0.9
903,429 + -1.5
903,690 + 1.8
903,721 - -0.9
903,723 + 0.5
903,745 + 0.3
903,894 - -0.3
903,902 + -0.0
904,066 - 0.3
904,505 - 15477 mRNA_7109 0.27 -1.0