Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7105

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7104: 15472 - K09448 TEAD transcriptional enhancer factor, at 888433 to 891786 15472 mRNA_7105: 15473 - KOG1890 Phosphoinositide phosphatase SAC1, at 892209 to 895612 15473 mRNA_7106: 15474 - K11313 SUPT3H, SPT3 transcription initiation protein SPT3, at 895700 to 897201 15474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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891,228 + 15472 mRNA_7104 0.83 0.0
891,249 + 15472 mRNA_7104 0.84 0.3
891,338 - 15472 mRNA_7104 0.87 -1.6
891,358 - 15472 mRNA_7104 0.87 0.7
891,367 + 15472 mRNA_7104 0.87 0.4
891,384 - 15472 mRNA_7104 0.88 -0.8
891,536 - -0.6
891,555 - -0.0
891,615 - -0.9
891,690 - -1.0
891,694 + 2.2
891,699 - 0.7
891,699 - 1.5
891,716 - 0.8
891,726 - -0.0
891,844 - 1.8
891,859 - -0.0
891,873 - -0.8
891,873 - -0.0
891,921 + 1.5
891,924 - -0.3
891,930 - -0.3
892,116 - 1.0
892,122 + -1.3
892,137 + 2.1
892,162 - -0.0
892,170 - -0.2
892,172 - 2.7
892,183 + 1.3
892,192 - -1.0
892,198 - 1.5
892,322 + 0.9
892,345 - 0.1
892,345 + -0.3
892,397 - 0.2
892,475 - 0.2
892,480 - -0.4
892,486 + -1.0
892,650 - 15473 mRNA_7105 0.13 -0.0
892,914 + 15473 mRNA_7105 0.21 0.4
893,214 - 15473 mRNA_7105 0.30 -0.4
893,339 + 15473 mRNA_7105 0.33 0.7
894,201 - 15473 mRNA_7105 0.59 -1.3
894,437 + 15473 mRNA_7105 0.65 1.0
894,489 - 15473 mRNA_7105 0.67 -0.3
894,513 + 15473 mRNA_7105 0.68 -0.8
894,977 + 15473 mRNA_7105 0.81 0.5
895,002 - 15473 mRNA_7105 0.82 0.0
895,399 - 0.4
895,417 - -0.9
896,016 + 15474 mRNA_7106 0.21 0.9
896,481 - 15474 mRNA_7106 0.52 1.5