Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7092

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859673 to 862971 15459 mRNA_7092: 15460 - KOG2545 Conserved membrane protein, at 863308 to 866540 15460 mRNA_7093: 15461 - K16073 ALR, MNR magnesium transporter, at 866899 to 868705 15461

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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862,356 - 15459 mRNA_7091 0.81 1.9
862,787 + 1.3
862,813 - -2.2
862,831 - -0.9
862,848 - 1.3
862,975 + 1.5
863,009 + -0.8
863,175 - -0.3
864,048 + 15460 mRNA_7092 0.23 -1.1
864,049 + 15460 mRNA_7092 0.23 1.3
864,049 - 15460 mRNA_7092 0.23 0.6
864,057 + 15460 mRNA_7092 0.23 0.8
864,223 + 15460 mRNA_7092 0.28 2.3
864,341 + 15460 mRNA_7092 0.32 1.1
864,377 - 15460 mRNA_7092 0.33 1.5
864,532 + 15460 mRNA_7092 0.38 1.3
864,810 - 15460 mRNA_7092 0.46 -1.4
864,838 + 15460 mRNA_7092 0.47 1.3
865,100 - 15460 mRNA_7092 0.55 1.7
865,259 + 15460 mRNA_7092 0.60 0.5
865,404 + 15460 mRNA_7092 0.65 0.5
865,425 + 15460 mRNA_7092 0.65 0.9
865,554 - 15460 mRNA_7092 0.69 -0.5
866,121 - 15460 mRNA_7092 0.87 2.6
866,301 + 1.2
866,428 - -0.3
866,428 + -1.4
866,438 + 0.1
866,440 + 0.1
866,444 + 0.2
866,497 + 0.3
866,574 - -0.4
866,584 - 0.8
866,590 - 0.8
866,594 + -1.5
866,598 - -0.7
866,609 - -0.8
866,614 + -1.0
866,621 + 0.2