Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7002

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642201 to 644311 15369 mRNA_7002: 15370 - Hypothetical Protein, at 644510 to 646069 15370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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643,799 - 15369 mRNA_7001 0.76 -0.2
643,910 - 15369 mRNA_7001 0.81 -0.7
643,983 - 15369 mRNA_7001 0.84 0.4
644,102 - 0.9
644,227 - -0.7
644,399 + 2.6
644,516 - 0.8
644,549 - -0.4
644,686 - 15370 mRNA_7002 0.11 0.1
644,689 + 15370 mRNA_7002 0.11 1.5
644,695 - 15370 mRNA_7002 0.12 0.4
644,699 - 15370 mRNA_7002 0.12 0.5
644,700 + 15370 mRNA_7002 0.12 2.0
644,704 + 15370 mRNA_7002 0.12 -0.1
644,706 + 15370 mRNA_7002 0.13 1.5
644,714 - 15370 mRNA_7002 0.13 0.7
644,718 + 15370 mRNA_7002 0.13 1.4
644,722 + 15370 mRNA_7002 0.14 0.8
644,840 - 15370 mRNA_7002 0.21 -0.1
644,848 - 15370 mRNA_7002 0.22 -0.1
644,869 - 15370 mRNA_7002 0.23 1.8
644,873 - 15370 mRNA_7002 0.23 -0.1
644,972 + 15370 mRNA_7002 0.30 -0.2
644,994 - 15370 mRNA_7002 0.31 -1.0
645,013 + 15370 mRNA_7002 0.32 -0.5
645,019 + 15370 mRNA_7002 0.33 0.9
645,026 + 15370 mRNA_7002 0.33 2.0
645,164 + 15370 mRNA_7002 0.42 -0.2
645,422 + 15370 mRNA_7002 0.58 0.4
645,461 + 15370 mRNA_7002 0.61 -0.4
645,576 - 15370 mRNA_7002 0.68 -0.6
645,709 + 15370 mRNA_7002 0.77 0.4
645,717 + 15370 mRNA_7002 0.77 0.9
645,732 + 15370 mRNA_7002 0.78 0.7
646,005 - -1.2
646,028 + 2.1
646,035 + 1.9
646,056 - 1.2
646,214 - -0.2
646,214 + 0.5
646,219 + 1.7
646,226 - 0.6
646,238 + -1.6
646,338 + -0.1
646,370 - -0.0
646,377 + -0.4
646,390 + -0.6
646,484 - 1.3
646,553 + 1.8