Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6911

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411729 to 414888 15278 mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415549 to 417203 15279 mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417441 to 418066 15280

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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414,847 + 1.0
414,865 - 0.7
414,970 - 0.5
414,987 + -0.7
415,114 - 0.3
415,123 - -0.3
415,141 + 2.3
415,271 + -0.2
415,309 + -0.9
415,428 - 0.6
415,440 - 1.4
415,453 + -0.3
415,465 - 0.5
415,467 - -0.3
415,470 + 1.2
415,484 + 0.1
415,487 + -0.2
415,590 + 2.2
415,595 + 2.1
415,603 + 0.6
415,605 - 0.2
415,614 - 0.3
415,736 + 15279 mRNA_6911 0.11 0.2
415,742 - 15279 mRNA_6911 0.12 0.2
415,746 - 15279 mRNA_6911 0.12 -0.1
415,746 - 15279 mRNA_6911 0.12 -0.8
415,771 - 15279 mRNA_6911 0.13 -0.9
415,772 + 15279 mRNA_6911 0.13 -0.2
415,786 + 15279 mRNA_6911 0.14 -0.5
415,787 + 15279 mRNA_6911 0.14 0.4
415,789 + 15279 mRNA_6911 0.15 -0.7
415,792 - 15279 mRNA_6911 0.15 -1.0
416,088 + 15279 mRNA_6911 0.33 1.3
416,233 - 15279 mRNA_6911 0.41 -0.1
416,237 + 15279 mRNA_6911 0.42 0.9
416,245 - 15279 mRNA_6911 0.42 -0.3
416,651 - 15279 mRNA_6911 0.67 0.8
416,663 - 15279 mRNA_6911 0.67 1.6
416,937 - 15279 mRNA_6911 0.84 -0.3