Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6880

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6879: 15247 - KOG0293 WD40 repeat-containing protein, at 339326 to 341674 15247 mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342593 to 344205 15248 mRNA_6881: 15249 - Hypothetical Protein, at 344637 to 347114 15249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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341,596 + 0.9
341,607 - -0.9
341,730 - 0.1
341,741 + 0.5
341,752 - 0.8
341,756 + 0.5
341,904 + -0.5
342,053 + 1.3
342,058 + 1.4
342,188 - 1.8
342,188 - -1.2
342,195 + -0.1
342,198 - 0.5
342,211 + 1.6
342,233 + 0.3
342,347 + -0.4
342,347 + 1.4
342,357 - -0.6
342,361 - -0.7
342,371 + -0.9
342,508 - 0.2
342,533 + 1.7
342,636 - -1.5
342,660 + -0.0
342,786 + 15248 mRNA_6880 0.12 -2.8
343,237 - 15248 mRNA_6880 0.40 -1.5
343,385 + 15248 mRNA_6880 0.49 -0.8
343,753 + 15248 mRNA_6880 0.72 3.1
343,801 - 15248 mRNA_6880 0.75 -0.3
343,821 - 15248 mRNA_6880 0.76 -3.0
343,982 - 15248 mRNA_6880 0.86 -0.4
344,024 - 15248 mRNA_6880 0.89 -1.4
344,110 - -1.1
344,127 - -1.9
344,129 - 1.0
344,141 + -1.7
344,314 + -2.3
344,422 + -0.3
344,423 + 0.3
344,428 + -0.8
344,430 + -0.0
344,453 - -0.5
344,462 + -1.1
344,463 - 0.9
344,470 + 1.0
344,475 + -1.5
344,546 - 1.2
344,551 + 0.9
344,585 + -0.2
344,585 + -0.4
344,587 + -0.9
344,587 + 0.4
344,615 - 0.9
344,713 + 0.3
344,726 + -0.4
345,068 + 15249 mRNA_6881 0.17 -0.5
345,145 - 15249 mRNA_6881 0.21 -0.8
345,178 + 15249 mRNA_6881 0.22 -0.4
345,198 + 15249 mRNA_6881 0.23 -0.1
345,199 + 15249 mRNA_6881 0.23 0.0