Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6874

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326924 to 328423 15241 mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328504 to 329604 15242 mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329876 to 331485 15243

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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327,630 - 15241 mRNA_6873 0.47 0.7
327,670 + 15241 mRNA_6873 0.50 0.7
327,673 - 15241 mRNA_6873 0.50 0.4
327,766 - 15241 mRNA_6873 0.56 0.7
327,827 + 15241 mRNA_6873 0.60 0.1
328,344 - -0.6
328,494 - -0.5
328,500 - 1.6
328,631 - 15242 mRNA_6874 0.12 0.3
328,633 + 15242 mRNA_6874 0.12 -0.1
328,638 + 15242 mRNA_6874 0.12 0.0
328,640 + 15242 mRNA_6874 0.12 -0.3
328,658 + 15242 mRNA_6874 0.14 -0.1
328,802 - 15242 mRNA_6874 0.27 -0.0
328,919 + 15242 mRNA_6874 0.38 0.1
329,097 + 15242 mRNA_6874 0.54 -0.3
329,233 + 15242 mRNA_6874 0.66 0.5
329,254 + 15242 mRNA_6874 0.68 -0.9
329,394 + 15242 mRNA_6874 0.81 0.5
329,398 - 15242 mRNA_6874 0.81 0.6
329,809 - 0.7
329,825 + -0.0
330,073 + 15243 mRNA_6875 0.12 0.6
330,251 + 15243 mRNA_6875 0.23 0.6
330,396 - 15243 mRNA_6875 0.32 1.2
330,527 - 15243 mRNA_6875 0.40 1.0