Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6832

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227427 to 228724 15198 mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229033 to 229533 15199 mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229712 to 231545 15200 mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231692 to 232700 15201

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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228,847 + 0.7
228,872 + 1.5
228,894 - 0.6
228,981 + -1.4
229,147 - 15199 mRNA_6831 0.23 0.6
229,149 + 15199 mRNA_6831 0.23 -0.1
229,150 - 15199 mRNA_6831 0.23 0.2
229,457 - 15199 mRNA_6831 0.85 0.0
229,467 + 15199 mRNA_6831 0.87 0.4
229,467 + 15199 mRNA_6831 0.87 1.1
229,545 - 0.7
229,568 + 0.0
229,593 - 1.1
230,039 - 15200 mRNA_6832 0.18 0.2
230,325 + 15200 mRNA_6832 0.33 0.7
230,457 + 15200 mRNA_6832 0.41 0.7
230,895 - 15200 mRNA_6832 0.65 -1.1
231,024 - 15200 mRNA_6832 0.72 2.1
231,058 - 15200 mRNA_6832 0.73 -0.5
231,192 - 15200 mRNA_6832 0.81 2.0
231,238 + 15200 mRNA_6832 0.83 0.1
231,350 + 15200 mRNA_6832 0.89 0.3
231,471 + -0.1
231,471 - 0.1
231,499 - 2.2
231,515 + 0.4
231,622 - -0.5
231,632 + 1.1
231,659 + -0.2
231,674 + -0.8
231,775 - 0.6
231,783 - 1.9
231,792 + 2.4
231,795 + 15201 mRNA_6833 0.10 -0.7
231,815 - 15201 mRNA_6833 0.12 0.4
231,815 + 15201 mRNA_6833 0.12 -2.2
231,930 - 15201 mRNA_6833 0.24 2.0
231,931 - 15201 mRNA_6833 0.24 0.4
231,937 - 15201 mRNA_6833 0.24 0.1
231,955 + 15201 mRNA_6833 0.26 1.6
231,962 - 15201 mRNA_6833 0.27 0.1
232,047 + 15201 mRNA_6833 0.35 0.5
232,513 + 15201 mRNA_6833 0.81 -0.1