Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6828

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6827: 15195 - K19029 PFKFB2 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 2, at 220795 to 223587 15195 mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223853 to 225358 15196 mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225875 to 227277 15197

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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222,947 - 15195 mRNA_6827 0.77 0.4
223,094 - 15195 mRNA_6827 0.82 0.7
223,099 - 15195 mRNA_6827 0.82 -0.1
223,103 + 15195 mRNA_6827 0.83 -0.1
223,104 + 15195 mRNA_6827 0.83 -0.2
223,111 + 15195 mRNA_6827 0.83 -0.4
223,149 + 15195 mRNA_6827 0.84 0.5
223,253 + 15195 mRNA_6827 0.88 0.4
223,262 - 15195 mRNA_6827 0.88 -0.2
223,370 + 2.2
223,371 - -0.0
223,473 - -0.8
223,491 - 0.8
223,495 - 1.3
223,517 - 0.2
223,536 - -0.2
223,540 + -0.1
223,541 + -0.2
223,541 + 0.2
223,682 - 0.0
223,865 + 0.2
224,274 - 15196 mRNA_6828 0.28 1.6
224,502 - 15196 mRNA_6828 0.43 -0.2
224,981 + 15196 mRNA_6828 0.75 0.3
225,112 - 15196 mRNA_6828 0.84 0.4
225,130 + 15196 mRNA_6828 0.85 -1.9
225,142 - 15196 mRNA_6828 0.86 1.5
225,449 - 0.6
225,455 + -0.1
225,461 + -0.2
225,568 + 0.2
225,585 - -1.5
225,592 + 0.5
225,597 + -0.0
225,730 - 0.3
225,896 + -0.7
225,901 - 0.6