Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6813

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196368 to 197656 15180 mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198108 to 198984 15181 mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199925 to 200316 15182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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197,136 - 15180 mRNA_6812 0.60 -0.1
197,237 - 15180 mRNA_6812 0.67 2.0
197,561 - 1.1
197,582 + -1.5
197,649 + -1.0
197,723 + 0.4
197,734 - 2.4
197,837 + -0.3
197,838 - 0.9
197,851 - 1.0
197,853 + -1.4
197,859 + -1.1
198,180 + 1.0
198,194 + -0.2
198,275 + 15181 mRNA_6813 0.19 1.2
198,331 + 15181 mRNA_6813 0.25 0.6
198,451 + 15181 mRNA_6813 0.39 -0.4
198,580 - 15181 mRNA_6813 0.54 0.2
198,595 - 15181 mRNA_6813 0.56 0.1
198,719 + 15181 mRNA_6813 0.70 -1.0
198,910 + -0.1
198,913 - -0.4
199,041 - -0.8
199,060 + -1.0
199,143 + 0.1
199,220 - 1.0
199,334 - -0.2
199,338 + -0.9
199,364 - 0.5
199,713 + 0.3