Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6703

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1485831 to 1488005 15070 mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1488338 to 1490366 15071 mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1490466 to 1492340 15072

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,487,394 - 15070 mRNA_6702 0.72 1.5
1,487,513 - 15070 mRNA_6702 0.77 0.5
1,487,514 + 15070 mRNA_6702 0.77 -0.5
1,487,542 + 15070 mRNA_6702 0.79 -0.8
1,487,717 + 15070 mRNA_6702 0.87 -0.7
1,487,829 + 1.7
1,487,832 - 1.9
1,488,104 + 0.2
1,488,110 - -0.5
1,488,117 + 0.4
1,488,131 + 0.2
1,488,141 + 0.6
1,488,141 + 0.9
1,488,147 - -0.0
1,488,167 - -1.4
1,488,175 + 0.4
1,488,294 - 0.5
1,488,300 - 0.5
1,488,316 - 0.5
1,488,451 + 1.2
1,488,757 + 15071 mRNA_6703 0.21 0.1
1,488,871 + 15071 mRNA_6703 0.26 -0.0
1,488,881 + 15071 mRNA_6703 0.27 -0.1
1,489,026 - 15071 mRNA_6703 0.34 -3.4
1,489,066 + 15071 mRNA_6703 0.36 -0.4
1,489,787 - 15071 mRNA_6703 0.71 -0.7
1,490,526 - -1.3
1,490,799 - 15072 mRNA_6704 0.18 1.0
1,491,073 + 15072 mRNA_6704 0.32 -0.7
1,491,219 - 15072 mRNA_6704 0.40 0.5
1,491,263 + 15072 mRNA_6704 0.43 -0.7